Education
2020-[2025]
PhD - Department of Informatics, Palacky University, Olomouc
Expected graduation: 05/2025
2018-2020
MSc - Department of Biochemistry, Palacky University, Olomouc
Masters degree, Bioinformatics
2015-2018
Bc - Department of Biochemistry, Palacky University, Olomouc
Bachelor degree, Bioinformatics
Employment
2020-[now]
Researcher - Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany AS CR, v.v.i
Conducting bioinformatic and statistical data analysis.
2019-[now]
Full-stack developer and network manager for ISP Unartel, s.r.o.
Working on a Freenetis application for managing network services.
2017-[now]
Research assistant - software developer
(2019-2020) Developing Pokusnice hub - cookbook for high school chemistry teachers.
(2017-?) Developing MolMeDB - database of interactions of small molecules on biological membranes.
Research interests
Boolean/fuzzy matrix decomposition
Bioinformatics and biostatistics - Genome-wide association studies, Single Nucleotide Polymorphisms discovery, Transcriptome data analysis, BLAST, Phylogenetics, ...
Web technologies - PHP, Javascript, React (NextJS), CSS (Tailwind)
Docker and Kubernetes - container orchestration
Ansible - server and configuration management
Publications
MolMeDB: Molecules on Membranes Database
Juračka J., Šrejber M., Melíková M., Bazgier V., Berka K.: MolMeDB: Molecules on Membranes Database. Database, Volume 2019, 2019, baz078
Identification, High-Density Mapping, and Characterization of New Major Powdery Mildew Resistance Loci From the Emmer Wheat Landrace GZ1
Korchanova Z., Svec M., Janakova E., Lampar A., Majka M., Holusova K., Bonchev G., Juracka J., Capal P., Valarik M. (2022): Identification, high-density mapping, and characterization of new major powdery mildew resistance loci from the emmer wheat landrace GZ1. Front Plant Sci 13:897697.
The chromatin determinants and Ph1 gene effect at wheat sites with contrasting recombination frequency
Majka M., Janakova E., Jakobson I., Jarve K., Capal P., Korchanova Z., Lampar A., Juračka J., Valárik M. (2023): The chromatin determinants and Ph1 gene effect at wheat sites with contrasting recombination frequency. Journal of Advanced Research, Volume 53, 2023, p. 75-85.
Courses
Kubernetes - container orcherstration
March 2024 - Academy CZ.NIC
Docker containers
March 2024 - Academy CZ.NIC
GIT - universal versioning system
March 2020 - Academy CZ.NIC
Projects
Freenetis frontend (2024 - now)
A complete poject design and development of a new GUI for Freenetis application utilizing React on the NextJS framework.
Technologies: React, NextJS, NextUI, React-native, Tailwind
Freenetis mobile (2020)
Smartphone alternative of Freenetis application for Android/iOS.
Technologies: Flutter (Currently replaced by a PWA version of the Freenetis frontend application.)
Freenetis: complex system for managing network services provided by ISP (2019-now)
Open source information system for managing community-based networks. It provides features like payment management, user and device management, services management, etc.
Pokusnice: Chemická kuchařka pro všechny (in czech) (2019-2020)
Chemická kuchařka vytvořená jako podpůrný materiál pro učitele středních a základních škol.
Technologies: PHP8, MySQL, Javascript, Python, HTML5, CSS3